Epigenomics

ATAC-seq is more than a peak list

How to get more biological information from ATAC-seq by looking at fragments, nucleosomes, TSS profiles, footprints and genomic signal.

A QC checklist before trusting ChIP-seq or ATAC-seq peaks

A compact checklist for deciding whether ChIP-seq or ATAC-seq peak calls are biologically interpretable.

ATAC-seq as an integrative assay for aging and cancer

Developing ATAC-seq beyond chromatin accessibility into an all-in-one assay for genetic, epigenetic and aging-related signatures.